CFTR-NGS catalogue

*CFTR*-NGS Variant details:
Name	NM_000492.4:c.1585-10330T>A
Protein name	NP_000483.3:p.(?)
Genomic name (hg19)	chr7:g.117217463T>A UCSC gnomAD
#Exon/intron	intron 11
Type in CFTR-NGS catalogue	-
*Class in CFTR-France*	not reported
WT sequence	AGCTTGAATGATGAACAACTTGAAT T GTTTAAAGTGGATCACACAGTCTAC
Mutant sequence	AGCTTGAATGATGAACAACTTGAAT A GTTTAAAGTGGATCACACAGTCTAC

CFTR-NGS Variant details:

Name

NM_000492.4:c.1585-10330T>A

Protein name

NP_000483.3:p.(?)

Genomic name (hg19)

chr7:g.117217463T>A UCSC gnomAD

#Exon/intron

intron 11

Type in CFTR-NGS catalogue

Class in CFTR-France

not reported

WT sequence

AGCTTGAATGATGAACAACTTGAAT T GTTTAAAGTGGATCACACAGTCTAC

Mutant sequence

AGCTTGAATGATGAACAACTTGAAT A GTTTAAAGTGGATCACACAGTCTAC

Additional information:
MAF (GnomAD)	1.04e-01
Splicing prediction (SpliceAI)	AG: 0.00 (2) AL: 0.01 (-40) DG: 0.00 (2) DL: 0.00 (34)

Additional information:

MAF (GnomAD)

1.04e-01

Splicing prediction (SpliceAI)

AG: 0.00 (2)
AL: 0.01 (-40)
DG: 0.00 (2)
DL: 0.00 (34)

External sources:
Not found	Not found	dbSNP rs35993090	Not found

Variant validation:
Sanger (present/not present/not verified)	Minigene (effect/no effect/not performed)
not verified	not performed

Variant validation:

Sanger
(present/not present/not verified)

Minigene
(effect/no effect/not performed)

not verified

not performed

No patient found in CFTR-France

3 individuals (out of 136) carrying this variant are reported in CFTR-NGS catalogue:
TOTAL NUMBER OF INDIVIDUALS	3
Asymptomatic	1
Suspicion of CF	2

Details of NGS patients:
ID	Phenotype	Laboratory	Experiment	Variant status	Variant filter	Quality score	Depth of coverage
MUCO07358	Asymptomatic	Montpellier	100714_varilh	heterozygous	PASS	3327	74
cad200291	Suspicion of CF	Montpellier	151220_Altieri	heterozygous	PASS	2045	290
cad200419	Suspicion of CF	Montpellier	151220_Altieri	heterozygous	PASS	1676	229

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