catalog




CFTR-NGS variants catalogue



CFTR-NGS Variant details:
Name NM_000492.4:c.1687T>A
Protein name NP_000483.3:p.(Tyr563Asn)
Genomic name (hg19) chr7:g.117230414T>A    UCSC    gnomAD
#Exon/intron exon 13
Legacy Name Y563N
Type in CFTR-NGS catalogue -
Class in CFTR-France disease-causing
WT sequence TTTCCATTTTCTTTTTAGAGCAGTA T ACAAAGATGCTGATTTGTATTTATT
Mutant sequence TTTCCATTTTCTTTTTAGAGCAGTA A ACAAAGATGCTGATTTGTATTTATT


Additional information:
MAF (GnomAD) -
Splicing prediction (SpliceAI) -

External sources:
dbSNP
no rs

Variant validation:
Sanger
(present/not present/not verified)
Minigene
(effect/no effect/not performed)
presentnot performed


Pathogenicity predictions:
AGVGD MAPP SIFT PPH2
C25 0.00331 0.02 1
VUS2 VUS5 VUS5 VUS5
Color code:   non disease-causing <   VUS1 <   VUS2 <   VUS3 <   VUS4 <   VUS5 <   disease-causing


No patient found in CFTR-NGS

1 individual reported in CFTR-France







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