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CFTR-NGS variants catalogue
Variant hg19:chr7:117239622ATT/A
| Name | NM_000492.4:c.2620-3257_2620-3256delTT |
| Protein name | NP_000483.3:p.(=) |
| Genomic name (hg19) | chr7:g.117239623_117239624del UCSC |
| #Exon/intron | intron 15 |
| Type in CFTR-NGS catalogue | - |
| Class in CFTR-France | not reported |
| WT sequence | CTTTTAGTGGACAAAACAATTGATA TT GCCCTTTTCTGGAAAAGAAATAATG |
| Mutant sequence | CTTTTAGTGGACAAAACAATTGATA -- GCCCTTTTCTGGAAAAGAAATAATG |
| MAF (GnomAD) | 1.51e-02 |
| Splicing prediction (SpliceAI) | AG: 0.00 (-17) AL: 0.00 (-32) DG: 0.00 (26) DL: 0.00 (-3) |
 Not found |  Not found | dbSNP rs138816759 |  Not found |  |
| Sanger (present/not present/not verified) |
Minigene (effect/no effect/not performed) |
| not verified | not performed |
No patient found in CFTR-France |
| TOTAL NUMBER OF INDIVIDUALS | 1 |
|---|---|
| Suspicion of CF | 1 |
| ID | Phenotype | Laboratory | Experiment | Variant status | Variant filter | Quality score | Depth of coverage |
|---|---|---|---|---|---|---|---|
| m4959 | Suspicion of CF | Montpellier | 151220_Altieri | heterozygous | PASS | 1957 | 81 |
