catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117241980T/A


CFTR-NGS Variant details:
Name NM_000492.4:c.2620-900T>A
Protein name NP_000483.3:p.(?)
Genomic name (hg19) chr7:g.117241980T>A    UCSC    gnomAD
#Exon/intron intron 15
Type in CFTR-NGS catalogue -
Class in CFTR-France not reported
WT sequence GAACATTTGTTCCTTAGCCAAATGT T TCCACCTTGAGAAAGCTATAGAGAT
Mutant sequence GAACATTTGTTCCTTAGCCAAATGT A TCCACCTTGAGAAAGCTATAGAGAT


Additional information:
MAF (GnomAD) 1.08e-03
Splicing prediction (SpliceAI) AG: 0.00 (-3)
AL: 0.00 (-24)
DG: 0.00 (-3)
DL: 0.00 (39)




External sources:

Not found
Not found		dbSNP
rs528562941
Not found

Variant validation:
Sanger
(present/not present/not verified)
 Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


1 individual (out of 136) carrying this variant is reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 1
CF 1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
18MU01177CFCochin150419_Altieriheterozygous PASS 1432 147





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