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CFTR-NGS variants catalogue
Variant hg19:chr7:117273403G/A
| Name | NM_000492.4:c.3717+5579G>A |
| Protein name | NP_000483.3:p.(?) |
| Genomic name (hg19) | chr7:g.117273403G>A UCSC gnomAD |
| #Exon/intron | intron 22 |
| Type in CFTR-NGS catalogue | - |
| Class in CFTR-France | not reported |
| WT sequence | TATAGGAAAATGATTTTTTTTGCAT G TTAGCCTTATATCTTTCAACTTTGC |
| Mutant sequence | TATAGGAAAATGATTTTTTTTGCAT A TTAGCCTTATATCTTTCAACTTTGC |
| MAF (GnomAD) | 7.52e-02 |
| Splicing prediction (SpliceAI) | AG: 0.00 (0) AL: 0.00 (-20) DG: 0.00 (8) DL: 0.00 (-1) |
 Not found |  Not found | dbSNP rs10246649 |  Not found |  |
| Sanger (present/not present/not verified) |
Minigene (effect/no effect/not performed) |
| not verified | not performed |
No patient found in CFTR-France |
| TOTAL NUMBER OF INDIVIDUALS | 2 |
|---|---|
| CFTR-RD | 1
|
| Suspicion of CF | 1 |
| ID | Phenotype | Laboratory | Experiment | Variant status | Variant filter | Quality score | Depth of coverage |
|---|---|---|---|---|---|---|---|
| 9 | CFTR-RD | Montpellier | 150517_varilh | heterozygous | PASS | 2166 | 590 |
| m4959 | Suspicion of CF | Montpellier | 151220_Altieri | heterozygous | LowVariantFreq | 87 | 51 |
