catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117304562T/G


CFTR-NGS Variant details:
Name NM_000492.4:c.3964-180T>G
Protein name NP_000483.3:p.(?)
Genomic name (hg19) chr7:g.117304562T>G    UCSC    gnomAD
#Exon/intron intron 24
Type in CFTR-NGS catalogue -
Class in CFTR-France not reported
WT sequence AAAACAAGTTATAGACTGATTCTTT T GAGCTGTCAAGGTTGTAAATAGACT
Mutant sequence AAAACAAGTTATAGACTGATTCTTT G GAGCTGTCAAGGTTGTAAATAGACT


Additional information:
MAF (GnomAD) 7.33e-04
Splicing prediction (SpliceAI) AG: 0.00 (11)
AL: 0.00 (12)
DG: 0.00 (11)
DL: 0.00 (-36)




External sources:

Not found
Not found		dbSNP
rs554956601
Not found

Variant validation:
Sanger
(present/not present/not verified)
 Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


1 individual (out of 136) carrying this variant is reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 1
CFTR-RD1
  • CFTR-RD  1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
17MU00956CFTR-RDCochin150419_Altieriheterozygous PASS 4817 365





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