catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117175188C/T


CFTR-NGS Variant details:
Name NM_000492.4:c.580-114C>T
Protein name NP_000483.3:p.(?)
Genomic name (hg19) chr7:g.117175188C>T    UCSC    gnomAD
#Exon/intron intron 5
Type in CFTR-NGS catalogue -
Class in CFTR-France not reported
WT sequence CTAGATTTTAGTGTGCTCAGAACCA C GAAGTGTTTGATCATATAAGCTCCT
Mutant sequence CTAGATTTTAGTGTGCTCAGAACCA T GAAGTGTTTGATCATATAAGCTCCT


Additional information:
MAF (GnomAD) 3.07e-04
Splicing prediction (SpliceAI) AG: 0.00 (21)
AL: 0.00 (-5)
DG: 0.00 (21)
DL: 0.00 (15)




External sources:

Not found
Not found		dbSNP
no rs
Not found

Variant validation:
Sanger
(present/not present/not verified)
 Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


1 individual (out of 136) carrying this variant is reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 1
Suspicion of CF 1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
cad190204Suspicion of CFMontpellier150419_Altieriheterozygous PASS 1710 181





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