catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117179475G/GT


CFTR-NGS Variant details:
Name NM_000492.4:c.870-668dupT
Protein name NP_000483.3:p.(?)
Genomic name (hg19) chr7:g.117179486dup    UCSC    
#Exon/intron intron 7
Type in CFTR-NGS catalogue repeat
Class in CFTR-France not reported
WT sequence AAGAACCACTTGGGTTTTTTTTTTT - GTTTCAAACGCAAATCCTGGAAACC
Mutant sequence AAGAACCACTTGGGTTTTTTTTTTT T GTTTCAAACGCAAATCCTGGAAACC


Additional information:
MAF (GnomAD) 5.03e-02
Splicing prediction (SpliceAI) AG: 0.00 (28)
AL: 0.00 (26)
DG: 0.00 (0)
DL: 0.00 (-1)




External sources:

Not found
Not found		dbSNP
no rs
Not found

Variant validation:
Sanger
(present/not present/not verified)
 Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


2 individuals (out of 136) carrying this variant are reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 2
CF 1
CFTR-RD1
  • CFTR-RD  1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
9777CFMontpellier160218_varilhheterozygous PASS 5066 751
9CFTR-RDMontpellier150517_varilhheterozygous PASS 6312 699





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