CFTR-NGS catalogue

*CFTR*-NGS Variant details:
Name	NM_000492.4:c.53+10331G>C
Protein name	NP_000483.3:p.(?)
Genomic name (hg19)	chr7:g.117130532G>C UCSC gnomAD
#Exon/intron	intron 1
Type in CFTR-NGS catalogue	-
*Class in CFTR-France*	not reported
WT sequence	TCCAGTTTGAGTCTGAAGGCAGTCT G TTGGGGAATTTCGTCCTTCTCTGGG
Mutant sequence	TCCAGTTTGAGTCTGAAGGCAGTCT C TTGGGGAATTTCGTCCTTCTCTGGG

CFTR-NGS Variant details:

Name

NM_000492.4:c.53+10331G>C

Protein name

NP_000483.3:p.(?)

Genomic name (hg19)

chr7:g.117130532G>C UCSC gnomAD

#Exon/intron

intron 1

Type in CFTR-NGS catalogue

Class in CFTR-France

not reported

WT sequence

TCCAGTTTGAGTCTGAAGGCAGTCT G TTGGGGAATTTCGTCCTTCTCTGGG

Mutant sequence

TCCAGTTTGAGTCTGAAGGCAGTCT C TTGGGGAATTTCGTCCTTCTCTGGG

Additional information:
MAF (GnomAD)	7.93e-04
Splicing prediction (SpliceAI)	AG: 0.00 (33) AL: 0.00 (-20) DG: 0.00 (-8) DL: 0.00 (-5)

Additional information:

MAF (GnomAD)

7.93e-04

Splicing prediction (SpliceAI)

AG: 0.00 (33)
AL: 0.00 (-20)
DG: 0.00 (-8)
DL: 0.00 (-5)

External sources:
Not found	Not found	dbSNP no rs	Not found

Variant validation:
Sanger (present/not present/not verified)	Minigene (effect/no effect/not performed)
not verified	not performed

Variant validation:

Sanger
(present/not present/not verified)

Minigene
(effect/no effect/not performed)

not verified

not performed

No patient found in CFTR-France

3 individuals (out of 136) carrying this variant are reported in CFTR-NGS catalogue:
TOTAL NUMBER OF INDIVIDUALS	3
Suspicion of CF	3

Details of NGS patients:
ID	Phenotype	Laboratory	Experiment	Variant status	Variant filter	Quality score	Depth of coverage
m9196	Suspicion of CF	Montpellier	150419_Altieri	heterozygous	PASS	4569	434
csg182477	Suspicion of CF	Montpellier	151220_Altieri	heterozygous	PASS	6529	693
csg182478	Suspicion of CF	Montpellier	151220_Altieri	heterozygous	PASS	7036	695

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